Farm animal proteomics 2013

The Cost Organisation.- Farm animal proteomics: going to the European capital of culture 2013; Mangesh Bhide.- Part I – Invited plenary communications.- Mining deeper into the proteome: pros and cons of pre-fractionation and depletion; Ingrid Miller.- Detection and annotation of common post-translational modifications in mass spectrometry data; Julien Mariethoz et al.- Applied bioinformatics in the structural, post-genomic era; Dimitrios Vlachakis et al.- PTMomics – a potpourri of experimental approaches; Ana V. Coelho.- Gel-free quantitative proteomics approaches, current status; Gabriel Mazzucchelli, Edwin De Pauw.- New proteomics strategies applied to clinical studies; Bruno Domon, Sebastien Gallien.- Neuro-immune proteomic crosstalk in health and disease: partners in love, partners in divorce; Norbert Zilka et al.- Top-down proteomics: 2D gels are an integral part of the process; Jens R. Coorssen.- MALDI imaging mass spectrometry: applications, limitations and potential; Charles Pineau.- Parasite- and host-derived proteins involved in African trypanosome brain invasion and dysfunction; Krister Kristensson.- Proteomics at the host: pathogen interface; Richard Burchmore.- Microbial proteomics in food safety and animal welfare; Paola Roncada et al.- The search of stress markers in porcine by using proteomics; Anna Marco-Ramell et al.- Quest for biomarkers of the lean-to-fat ratio by proteomics in beef production; Muriel Bonnet et al.- The LEXSY platform for recombinant protein expression; Reinhard Breitling.- Part II – Advancing methodology for farm animal proteomics and bioinformatics.- Data-independent acquisition strategies for quantitative proteomics; Ute Distler et al.- Small intestinal response to enterotoxigenic Escherichia coli infection in pigs as revealed by label free UPLC/MSE proteomics; Laura Soler et al.- Rapid protein production of Atlantic Salmon, Salmo salar, serum amyloid A (SAA) in an inducible Leishmania tarentolae expression system; Mark Braceland et al.- Proteomic profiling of cerebrospinal fluid in canine degenerative myelopathy; Viviana Greco et al.- Automatic prediction of PTMs in Ehrlichia ruminantium – creating new datasets for Quickmod analyses; Miguel Ventosa et al.- Tandem mass spectrometry for species recognition and phenotyping in fish; Tune Wulff et al.- MALDI imaging mass spectrometry of ageing and osteoarthritic cartilage; Mandy J. Peffers et al.- Protein expression in bovine mononuclear cells after stimulation with lipopolysaccharides and lipoteichoic acid: a proteomic approach; Laura Restelli et al.- The ‘hidden’ proteome of cow’s and Jennys’ milk as revealed by combinatorial peptide ligand libraries; Elisa Fasoli et al.- Comparison between Coomassie Blue and Silver staining in porcine saliva samples for proteomics: technical considerations: a preliminary experiment; Maria Fuentes-Rubio et al.- Isoelectric focusing in characterisation of alkaline phosphatase isozyme from bovine nasal secretion and mucosa; M. Faizal Ghazali et al.- Part III – Infectious diseases.- PilE4 may contributes in the adhesion of Francisella to brain microvascular endothelial cells; Elena Bencurova et al.- Comparative proteomics analysis of campylobacteriosis in human and swine: a study of intestine epithelial cell response to bacterial infection; Carmen Aguilar et al.- Identification of amino acid residues of OspA of Borrelia involved in binding to CD40 receptor; Patrik Mlynarcik et al.- Omics approaches to study the Rickettsia Ehrlichia ruminantium: towards improved knowledge on Heartwater disease; Isabel Marcelino et al.- Detection of Salmonella antigens expressed in swine gut by hydrophobic antigen tissue triton extraction (HATTREX); Rodrigo P. Martins et al.- New approaches in the diagnosis and treatment of endotoxemia in calves: proteomic investigation and effects of intravenous choline administration; Meric Kocaturk et al.- Changes on bovine aorta endothelial cells (BAE) proteome upon infection with the rickettsia Ehrlichia ruminantium; Elisabete Pires et al.- Effect of Staphylococcus aureus infection on fibrinogen and plasma protein concentrations in experimentally obese rabbits; E. Dishlyanova et al.- Trypanosoma brucei brucei binds human complement regulatory protein C4BP; Saskia Dolinska et al.- A proteomic analysis of canine serum during the course of babesiosis; Josipa Kuleš et al.- The acute phase reaction in goats after experimentally induced E. coli mastitis: a proteomic approach; Lazarin Lazarov et al.- The effect of microbial challenge on the intestinal proteome of broiler chickens; Emily L. O’Reilly et al.- 2D DIGE comparative analysis of Escherichia coli strains with induced resistance to enrofloxacin; Cristian Piraset al.- In situ assessment of differential adhesion of neuroinvasive and non-neuroinvasive Borrelia strains to BMECs; Lucia Pulzova et al.- Caecal IEL, blood lymphocytes and intestinal mucin study in chickens after probiotic prevention and S. Enteritidis infection; Viera Revajova et al.- Bovine anaplasmosis: IgG2 reactivity in vaccinated cattle against conserved recombinant outer membrane proteins; Theah Molad et al.- Identification BMECs receptors interacting with Trypanosoma brucei brucei; Miroslava Vincova et al.- Effect of short-time overweight gain on the plasma PON1 activity after acute Staphylococcus aureus infection in rabbits ; Tatyana I. Vlaykova et al.- Part IV – Animal production.- Biomarkers of winter disease in gilthead seabream: a proteomics approach; Denise Schrama et al.- The absorption of colostral proteins in newborn lambs: an iTRAQ proteomics study; Lorenzo E. Hernandez-Castellano et al.- Plasma proteome profiles predict diet-induced metabolic syndrome and the early onset of metabolic syndrome in a pig model; Marinus F.W. te Pas et al.- Changes in protein abundance in the vertebral column of Atlantic salmon (Salmosalar) fed variable dietary P levels; Eva Veiseth-Kent et al.- Neurotransmitter levels and proteomic approach in pig brain: pre-slaughter handling stress and cognitive biases; Laura Arroyo et al.- The sheep (Ovis aries) mammary gland mitochondrial complexes: establishment of a Blue-Native PAGE separation method as a model for other ruminant species; Carlos Filipe et al.- Bitter taste in water-buffalo (Bubalus bubalis): from T2R gene identification to expression studies; Ana M. Ferreira et al.- Seasonal weight loss in dairy goats from the Canary Islands: towards an integrated omics approach?; Joana R. Lerias et al.- Analysis of endogenous and recombinant bovine somatotropin in serum; Marco H. Blokland et al.- Investigation of salivary acute phase proteins in calves; Mizanur Rahman et al.- Targeted proteomics as a tool for porcine acute phase proteins measurements; Anna Marco-Ramell et al.- LC-MS/MS analyses of visceral and subcutaneous adipose tissue proteomes in goats; Laura Restelli et al.- Comparison of the patterns of milk serum proteins in subclinical mastitis caused by four common pathogens in dairy cows; Shahabeddin Safi et al.- Intrauterine treated lambs as a model for the study of Intrauterine Growth Restriction (IUGR) and consequent metabolic disorders; Tommaso Serchi et al.- Effect of estradiol on biochemical bone metabolism markers in dairy cows; Jože Starič et al.- Dynamics of metabolic and oxidative stress parameters in dairy heifers during transition period; Petra Zrimšek et al.- The proteomics of wool follicles; Jeffrey E. Plowman et al.- Relationships between mediators of the acute phase response and altered energetic metabolism in dairy cows after calving; Gabriel Kovač et al.- Serum protein electrophoretic pattern in clinically healthy calves and cows; Csilla Tothova et al.- Part V – Food safety quality.- A mass spectrometric scoring system for oxidative damage in dairy foods; Stefan Clerens et al.- Shotgun proteomics in blue mussels exposed to benthic trawler-induced sediment resuspension from a polluted fjord; Sara Tedesco et al.- Milk and cheese microbiome for safety and quality of dairy products; Alessio Soggiu et al.- Molecular characterization of Maltese honey: diastase and proline levels changes in Maltese honey seasons; Adrian Bugeja Douglas et al.- Untargeted metabolomic analyses open new scenarios in post mortem pig muscles: Casertana and Large White; Cristina Marrocco et al.- The role of salt in dry cured ham processing characterized by LC-MS/MS-based proteomics; Gianluca Paredi et al.- Proteolytic action of caspases 3 and 7 on the hydrolysis of bovine and porcine muscle myofibrillar proteins; Rosa A. Rodriguez-Frometa et al.- Allergen characterization in Mediterranean farmed fish: a proteomic approach; I.M. Luis et al.- Protein exudation from salted meat in processing by cold tumbling; Priit Soosaar et al.- Peptidomics in extended shelf life dairy products, for assessment of proteolysis and product quality; Nanna Stengaard Villumsen et al.- Egg proteome: the protein and carotenoids characteristics deriving from laying hens reared in different housing systems and under different environmental conditions; Charles Spiteri et al.- Proteomics and transcriptomics investigation on longissimus muscles in Large White and Casertana pig breeds; Anna Maria Timperio et al.- Acknowledgements.